Plant MITE

SE2050885

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6087
Medicago truncatula
SE2050885
PIF/harbinger
To28
MtChr2:5607067-5607230
CTA
GTGTGTGTTTGGGAAG

Secondary structure and sequence

TSD TIR

5'

3'

CTA    G       -GA  -GCTTTT  A    AA       TTCCCA  -   CTATTCACACTTCCCAATGCATAAAAAAC
   GTGT TGTTTGG   AG       GG AGCT  AAACCAT      AT GCA                             
   |||| |||||||   ||       || ||||  |||||||      || |||                              
   CACG ACAAACC   TC       CC TCGA  TTTGGTG      CG TTT                             
ATC    G       ATA  ACCACCC  C    -A       CAAAAC  A   CGAGATTTAACCTCGAAGATGAAAAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050885

CTAGTGTGTGTTTGGGAAGGCTTTTGGAAGCTAAAAACCATTTCCCAATGCACTATTCACACTTCCCAATGCATAAAAAACATGAAAAAGTAGAAGCTCCAATTTAGAGCTTTAGCCAAAACGTGGTTTAAGCTCCCCCCACCACTATACCAAACAGGCACCTA

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