SE2020887

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6089
  • Medicago truncatula
  • SE2020887
  • Mutator
  • M13
  • MtChr7:18754730-18755085
  • TAAATTTAT
  • TAAATTTATGGCTTAATTGTAGTTTTGGTCCCCCTATTTTCACAATTTTGCAAAATTGGTCCCCATATTTTAAAATTCGATAGGTTTGGTCCCTTCATTATATTTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
         T                       C         -      T           C  CA        A   C     G       CC   -    -TAT     AACCA     --A            AA         --TCATGG          GAAG    AAAA     AAC
 TAAATTTA GGCTTAATTGTAGTTTTGGTCCC CTATTTTCA CAATTT GCAAAATTGGT CC  TATTTTAA ATT GATAG TTTGGTC  TTC ATTA    TTTTG     TAAAA   TGTGATGTGATA  TTTTAAATG        AATATGATTT    ATGA    TTATC   
 |||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||  |||||||| ||| ||||| |||||||  ||| ||||    |||||     |||||   ||||||||||||  |||||||||        ||||||||||    ||||    |||||    
 ATTTAAAT CCGAATTAACGTCAAAACCAGGG GATAAAAGT GTTAAA CGTTTTAACTA GG  ATAAAATT TAA CTGTT AAACCAG  AAG TAGT    AAAAC     ATTTT   ACACTATACTAT  AAAATTTAT        TTGTATTAAA    TGTT    AGTAG   
T        -                       A         A      -           A  AG        A   A     A       -T   A    TTAT     ---AG     ATA            AC         TTCAAAAG          ACAA    --AA     CTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End