SE2020889

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6091
  • Medicago truncatula
  • SE2020889
  • Mutator
  • M51
  • MtChr2:1328751-1329153
  • TTAAAAAAA
  • AAGGCTTAAATATGTCTTTCGTGCCTGCAAATATAGGTCATTTGAATTTTCGTCCCTGAAATTACTAATCCTTTCAATCTGCCCCTGCAAATATTAATCATTTGACTTTTGGTCCTAATTAGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAA            T  C      G                                     A                  T                                         G    TTTTGTTGA     ACTTCCATTAGCGACGTGGTGCCCATGTGGCAAGTGATGATTGGGCGACGTGGTTTG
       AAGGCTTAAATA GT TTTCGT CCTGCAAATATAGGTCATTTGAATTTTCGTCCCTGAA TTACTAATCCTTTCAATC GCCCCTGCAAATATTAATCATTTGACTTTTGGTCCTAATTA ATTT         GGTGG                                                         
       |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||         |||||                                                          
       TTCCGAATTTAT CA AAAGCA GGACGTTTATATCCAGTAAACTTAAAAGCAGGGACTT AATGATTAGGAAGGTTAG CGGGGACGTTTATAATTAGTAAACTGAAAACCAGGATTAAT TAAA         TCATT                                                         
TAAAAAA            C  T      G                                     C                  C                                         G    -----CTAA     GAAGTCCCTGCTTTTAAGTTTACTGGATATAAACATCCCTACTTTCTGGATAAATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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