SE2030892

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6094
  • Medicago truncatula
  • SE2030892
  • hAT
  • Hat39
  • MtChr2:26281099-26281731
  • TAGGCTAC
  • TAGGCTACTAGGGATGGGAATAGGTCAGGCCGGCCTACAGGGGTCTACGGCCTAGCCT

Secondary structure and sequence

TSD    TIR
5'



3'
    G   C                 C      -  ----  -ACA        C          --ACGACAGGCC       -   CTTA   ----  G AA     A GCTTTTTTAAAAGTTTATTTAGCTTAAAAGGCCAGGCCACAAGCTATTAGAAAAGCCTTTTAGGCCTATTAGGTCGGCCTACTTATTTAAATATGAAAAATATTATTGATTATTATATTATATACTCTACTTTGAATTAAATTATAAATTTGTCAACCTTTAAAATAATTTAAACTTATTAGTTTACATTATTTTTTTGCATATTAAAATGTATTA
 TAG CTA TAGGGATGGGAATAGGT AGGCCG GC    CT    GGGGTCTA GGCCTAGCCT            AGGCTTT TTT    AAT    AG T  GGCCT G                                                                                                                                                                                                                        
 ||| ||| ||||||||||||||||| |||||| ||    ||    |||||||| ||||||||||            ||||||| |||    |||    || |  ||||| |                                                                                                                                                                                                                        T
 ATC GAT ATCCCTACCCTTATCCG TCCGGC CG    GA    TTCCGGAT TCGGATCGGA            ATTCCGG TTC    GGA    AC G  TCGGA T                                                                                                                                                                                                                        
G   G   -                 A      T  TTCC  AACG        -          CATTATAAAAAC       A   ----   CCAG  - --     - AGTATCCGAATGTAAAATCCGAACTCATACCGGAATACTTTCGGACTAATCCGGTCGATCTGATAAATTTTCGGATAAAGTATACTTGTAGAAATTTATTCATTACACTAAGTTCAAATTTATCTGATCGCTTGATTATCTAGTCACTATAATTTGAGAGAACTTCAAAATCTCTTGAAATGTTATATAATATAGTATAAAGTTAAGATTAAATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End