SE2030895

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6097
  • Medicago truncatula
  • SE2030895
  • hAT
  • Hat21
  • MtChr1:24054225-24054624
  • CATTTTAT
  • CAGGGCCGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTTTAT    G        AAGAAT     - GCTCGACTCTGAGAATGAAAAGAGGTCAGTGATAAAATCAAAACGTATTTTTTAAAAAAAAAGTAATGATCTATTTATATTTTTTAAAAGATAAATATAAGGTGTCGTATATATGCGGTACACCCAAAGGTAAAAATGACTACCGTATACATGAAGAACCTCCACCTAA
        CAGG CCGTCCCT      TCGGA G                                                                                                                                                                         
        |||| ||||||||      ||||| |                                                                                                                                                                         C
        GTCC GGCAGGGA      CTCCC C                                                                                                                                                                         
TATTTTAC    G        ------     C ACGTTTGTCGAGTTGTCTCGACCCGGAGGGAGTCAGTACCCGGAGTTAAAAAAAAAATTATGGGTGATCATGATGACGGGAGATTTAAAAAAAATTATGGGGGTCGGTAAAAGACAGGGGAACAAAATCGGAAAATCCAGATAATCTTAATCTAGTAGAACGAAAACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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