SE2050896

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6098
  • Medicago truncatula
  • SE2050896
  • PIF/harbinger
  • To30
  • MtChr8:32078405-32078851
  • TAA
  • AGAGCATCCACAATGGTAGTTCCCTAACAAGGACTCCTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA        CA      TA T   ---  -          C   AAA   ACCCCACGTGACACATCACTTATTTATAATTTTTTAATAAAAGTACCTATTAAGGACTCAATGACTCCAATGGCAATACATTAATAAGGACTCCAATTCAAAATACTTAAATATGTCCCACTATCTTTACATCATTAAACGAAAATAATTTACCTATTACTCCTTTTTACAAGTGC
  AGAGCATC  CAATGG  G TCC   CT AACAAGGACT CTT   TGG                                                                                                                                                                                
  ||||||||  ||||||  | |||   || |||||||||| |||   |||                                                                                                                                                                                 
  TCTCGTAG  GTTACC  C AGG   GA TTGTTCCTGG GAG   GGG                                                                                                                                                                                
AA        AG      CC C   AAT  A          T   ---   CAATTCCTGGGAGGTAACCTCCTTCTTTTTTACTCAGGGGCAATTCCTTGCCCGTTGATATATTCCTGGGAGAGAGAGTACCCATTGATTGCCCAGGGTGCAAATTTTTTAATTATTTTACACATGATGAACCAGGGTGAACGTATTTCCTCATGATTTTACACATGATGAACCAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End