SE2050906

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6108
  • Medicago truncatula
  • SE2050906
  • PIF/harbinger
  • To4
  • MtChr5:33164626-33164852
  • TAT
  • GGCCCCGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT  C         TATG          -         A      A               T  C      -TTTA         --------CTCCCACT  CG     C    CTT
   GG CCCGTTTGG    AGCTTATTTT GAGCTTATG AAAATA CTTATGTAAATAAAT AG TTTTAT     ATTTATAAG                TG  AAAAT GTAT   
   || |||||||||    |||||||||| ||||||||| |||||| ||||||||||||||| || ||||||     |||||||||                ||  ||||| ||||    
   CC GGGCAAACC    TCGAATAAAA CTCGAATAT TTTTGT GAATACGTTTATTTA TC AAAATA     TAAATGTTC                AC  TTTTA CATA   
TAT  C         -TAA          T         A      C               T  A      CATAA         AAAAATTCCATCAAAT  TG     T    TAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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