SE2010909

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6111
  • Medicago truncatula
  • SE2010909
  • Tc1/Mariner
  • St23
  • MtChr2:27351702-27352009
  • TA
  • TACTCCCTCCGGTCTTGAATGTAAGAAACAAAAAAAAAATCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 -      ----------   CACATATTAA       -GATT        G  AA    ACC   T    T   A  T    ----------   T ---- GAAACATGACTTTTGAACTCCACCAATGAAAAA
TACTCCCTCCGGTCTTGAATGTAAGAAACAAAA AAAAAA          TCA          GAAAGTG     GAGTCATT TA  AAAT   ATT TTCC GTT TG CCTT          GTC T    G                                 
||||||||||||||||||||||||||||||||| ||||||          |||          |||||||     |||||||| ||  ||||   ||| |||| ||| || ||||          ||| |    |                                  
ATGAGGGAGGCCAGAGCTTACATTCTTTGTTTT TTTTTT          AGT          TTTTCAT     TTCAGTAG AT  TTTA   TGA AAGG TAA AT GGAG          AGG T    C                                 
                                 A      TAACAACCAG   -TTACATTCG       ATGTT        G  AA    CAA   T    T   A  T    TAAATGAAAT   - TAAA AAAGTGTAAGGGTACAAATTGCGTAAGGTTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3