SE2020914

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6116
  • Medicago truncatula
  • SE2020914
  • Mutator
  • M40
  • AC235663:38607-39042
  • TTTTTTAAA
  • AAAGGCTTAATTGCATGTTTGATCACTTATGTTTATTTTAGATTTTAAGTTAGTTATTTATGTTTTAAAAGTTTCAAGTTGATCCCTTATGTTTTAAAAGTTTCAAGTTGATTTAAAGCGTTACTGACATTTGAATAAGTTAGTCCTTTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTT                        A                A         A   A                         A            TA       -               C      G  A  T         A   C     ---  -      --  - GGTTAAAGATTTAGGTTGACAATGTGGGGTGGTGGAATTTAACTTAT
      AAAGGCTTAATTGCATGTTTGATC CTTATGTTTATTTTAG TTTTAAGTT GTT TTTATGTTTTAAAAGTTTCAAGTTG TCCCTTATGTTT  AAAGTTT CAAGTTGATTTAAAG GTTACT AC TT GAATAAGTT GTC TTTTC   GT CACTTG  AC T                                               
      |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||| |||||| || || ||||||||| ||| |||||   || ||||||  || |                                               T
      TTTCCGAATTAACGTACAAACTAG GAATACAAATAAAATC AAAGTTTAA TAG GAATACAAAATTTTCAAAGTTCAAC AGGGAATGCAAA  TTTCAAA GTTCGACTAGGTTTT CAATGA TG AA CTTATTCAA CAG AGAAG   CT TACTAT  CT A                                               
AAATTT                        G                C         C   G                         C            --       A               A      G  C  C         G   -     GTG  G      AA  C AATTATTTTATCTTTTTAATTTTTTTACAAAATTTTGACTAAAAGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End