SE2020920

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6122
  • Medicago truncatula
  • SE2020920
  • Mutator
  • M48
  • MtChr5:30595876-30596195
  • ACCAACCAC
  • GAGTTCGGGTATGCTCCATTTAGGCTAAGCTCCATTTACTCCATTTAAGGTTTGGATGCAAGACATGTGGCAAAAAAATATCCAACGGTTGAGATTTTAAATTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCAACCAC                                                                                                               - TA   GGT  TTGCCATATGAGAGAAGAAGGGAACATGATT
         GAGTTCGGGTATGCTCCATTTAGGCTAAGCTCCATTTACTCCATTTAAGGTTTGGATGCAAGACATGTGGCAAAAAAATATCCAACGGTTGAGATTTTAAATTAAAAAACA A  AAA   TG                               
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||   ||                                
         CTCAAGCCCATACGAGGTAAATCCGATTCGAGGTAAATGAGGTAAATTCCAAACCTACGTTCTGTACACCGTTTTTTTATAGGTTGCCAACTCTAAAATTTAATTTTTGAT T  ATA   AA                               
CCCCAACCA                                                                                                               T --   ---  CAAATTATTTTTATGTATTATTATTGTTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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