SE2030921

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6123
  • Medicago truncatula
  • SE2030921
  • hAT
  • Hat20
  • MtChr8:30488013-30488662
  • GGATGTGA
  • ATGTGATAGGGATGGCAATTGGACCCA

Secondary structure and sequence

TSD    TIR
5'



3'
GG    GA             T  -     GACTCG           CAAAAA      - C -  GG - A    -  A  -  C --   TCA - GATATGGGCACGGGTAGGGTAATTACCCGCAAATTTTAATGGGTATGGACACGGGTAAGGGTACTATACTACCCAGCCCCGCAACCCGCATGTACATATTTATATAATATAATAAATACTTTATTTATTTTTGGTGTACAATTATTTAATTTATTTAGCTATTTAAGTCTAAACCTAAACCTAAAATCTAAGCTATTTAAGTTTAAACCTAAATACTACGATTATTTGAATGTTTTTATTTT
  ATGT  TAGGGATGGCAAT GG ACCCA      ATGGATACCCG      ATACCC A A AT  G T GGGT AA AC CC G  CTT   T G                                                                                                                                                                                                                                                  
  ||||  ||||||||||||| || |||||      |||||||||||      |||||| | | ||  | | |||| || || || |  |||   | |                                                                                                                                                                                                                                                   
  TGTA  ATCCCTACCGTTA CC TGGGT      TACCTATCCCA      TGATAT A T GG  T G GGGT TG GG GT A  CAT   T T                                                                                                                                                                                                                                                  
AG    GG             C  A     ------           ------      C - A  -- A -    A  -  A  - AA   --- T TTACAGGCATGGGCTCGGGCATGGGAGCACCCGTTGTTGAAATTACGGGAAGGGGTATGGGATACCCGTGAATTCACGAGTATGGGGGTGGGTAATGGGCGTGAAAGAGATACTTTTCTGTTATTTTTTGTAGTGTTAACTTTATTTTGATACTAGGTTTTAATAAATTTAGTTGATTATTTTATTATGCTTAACATCATAAATCGGTTTATTTTTTTGTAGGTTTTATAGGGAGTTTTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End