SE2020922

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6124
  • Medicago truncatula
  • SE2020922
  • Mutator
  • M80
  • MtChr7:19098684-19099077
  • TTTTTTTTA
  • AGGTTAAATTACATCTGGGGTCCTTTAAGTTTGACGTTTGTAACAGATTAATCCTTTAAGTTATTTTGGTCACATATAAGTCCTTTAAGTTTGATATTTGTAACATATTGGTCCTTTAAGTTATTTTGGTCACACTTAAGTCTTTAAGTTTGATATTTGTAATAGATTGGTCCTTCTG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTTTT              C                                  AA  C    A           C           C           T         AT                     G       T      -          --AT    -G    AGA         C  CAAC    TCC
        AGGTTAAATTACAT TGGGGTCCTTTAAGTTTGACGTTTGTAACAGATT  TC TTTA GTTATTTTGGT ACATATAAGTC TTTAAGTTTGA ATTTGTAAC  ATTGGTCCTTTAAGTTATTTT GTCACAC TAAGTC TTTAAGTTTG    ATTT  TAAT   TTGGTCCTT TG    ATCA   
        |||||||||||||| ||||||||||||||||||||||||||||||||||  || |||| ||||||||||| ||||||||||| ||||||||||| |||||||||  ||||||||||||||||||||| ||||||| |||||| ||||||||||    ||||  ||||   ||||||||| ||    ||||    
        TCCGATTTAATGTG ACCTCAGGAAATTCAAACTGCAAACATTGTCTAA  AG AAAT CAATAAAACCA TGTGTATTCAG AAATTCAAACT TAAACATTG  TAACCAGGAAATTCAATAAAA CAGTGTG ATTCAG AAATTCAAAC    TGAA  GTTA   AATCAGGAA AC    TGGT   
ATTTTTTT              A                                  CC  A    C           T           T           C         CC                     G       T      T          ATTT    AA    ---         T  -AAT    TTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End