Plant MITE

SE2050923

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6125
Medicago truncatula
SE2050923
PIF/harbinger
To1
MtChr4:32196898-32197244
TTA
AGACCATCTCCAATGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TT   CC    C      -  -    CTTAAACATTTAAGACCCGGTACCTATTAGGTACCCCTGTTGAGGTGAATTTTTTTCAAGGTCTTATAAGACCCGGGGTCTTATTTAAGACCACCAACTTTAAGCGGGGCTCGCACGCTTTTAATATTAAAAAATTCAAATGTAGTGG
  AGA  ATCT CAATGG GA GGGT                                                                                                                                                    
  |||  |||| |||||| || ||||                                                                                                                                                    C
  TCT  TAGG GTTACC CT TGAG                                                                                                                                                    
AT   CA    T      T  G    CAAAACTCAAGAATTTACCCAGAGTGCGCATGTGTAGTGAGTAAATATTAAAAATTATCGTCATGAATTATTCATGAGTTAGGGAGGTTGTGACTAGAGTGAGTTTCAAGAATTTACTCTGAGTGATTAATTGATAGTTATTGAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050923

TTAGACCATCTCCAATGGGAGGGTCTTAAACATTTAAGACCCGGTACCTATTAGGTACCCCTGTTGAGGTGAATTTTTTTCAAGGTCTTATAAGACCCGGGGTCTTATTTAAGACCACCAACTTTAAGCGGGGCTCGCACGCTTTTAATATTAAAAAATTCAAATGTAGTGGCATAAAGTTATTGATAGTTAATTAGTGAGTCTCATTTAAGAACTTTGAGTGAGATCAGTGTTGGAGGGATTGAGTACTTATTAAGTACTGCTATTAAAAATTATAAATGAGTGATGTGTACGCGTGAGACCCATTTAAGAACTCAAAACGAGTGTCTCCATTGTGGATACTCTTA

Copy Cancel