SE2020924

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6126
  • Medicago truncatula
  • SE2020924
  • Mutator
  • M158
  • MtChr3:39667767-39667966
  • GATTCAGAT
  • TCAGATAGAGAAATTCTTTCTTGATCACAAACACAAGAAAAAAGTGTTTAGGCACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GAT  A  -TA   A  TT   T     T      C     -       T    A       ---------A   -  GAACAAAATTAAAGAAAAAATAATCGAAG
   TC GA   GAG AA  CTT CTTGA CACAAA ACAAG AAAAAAG GTTT GGCACAC          TAA TT                             
   || ||   ||| ||  ||| ||||| |||||| ||||| ||||||| |||| |||||||          ||| ||                              
   AG CT   CTC TT  GAA GAATT GTGTTT TGTTT TTTTTTC CAAA TCGTGTG          TCT TT                             
 AT  A  TAG   C  CT   C     T      A     A       -    C       AGTGTGTTCA   C  TTTATTTACTTTTTCTTAAATCAATATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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