Plant MITE

SE2050927

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6129
Medicago truncatula
SE2050927
PIF/harbinger
To22
MtChr3:38264343-38265110
TTA
AGGGGGCGTTTGTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT      C         --AGGGAT    AAA   A       AATAACTTACCTGGGAATAAAGTAGTGGGAAGTTTATTCCTGGGTATTTTAAAAAAAAGTGTTTGGTTAGTATTTTAATTTTTCAGGAATATTTTCAAAAAATGTTCCCATAAATAGCTAATTGTTGTTTAGTTTAGAATATATATTCCTAGAAAAAACATGATACAGTTACAAAAATACCTCTACCTTGTTTCTAAATCAATTTGAATTTATTTTACTACATTTTATTTTCATTATAACTTGAAGCATTTGAAAATACACCATGAAATAAAATTATGTTTTCATATAGTTGATTGATAGAATATAGTTGATTGTTATAATAGAACAATATTGTTGAAAACTT
  AGGGGG GTTTGTTTC        TCAT   TTA TCCCAGG                                                                                                                                                                                                                                                                                                                                                       
  |||||| |||||||||        ||||   ||| |||||||                                                                                                                                                                                                                                                                                                                                                        
  TCCCCC CAAACAAAG        TTTT   AAA TAAGGAC                                                                                                                                                                                                                                                                                                                                                       
AT      A         GTACAATA    ---   -       CCTTATACTCCTACCCTTACGTGAAAGGGTACAAACCATCTTCCATTTTCTTTTTATATGGACCCTTGTTTAATATGGGTCCTTTTAAAAATTGGGTACTAGAGGGATAAAAATAAGGGTACTTTTTCCTCAACCTTACAAAATAAGGATTCTTACTGTAAACGGAACGATGTACTTTTGGGGTGATGGTGGTACAAAAAAGTTGACGGTTAATTAAAGACAAAAAAAGAAAATGTATGAGATGTAGTTCTGTAACAATATTACGTACAATAATATACATTAAGTAGATAATAAAGAAATACAAGAAAAACCAAACACGTTTTTTTATAAATACACAGATAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050927

TTAGGGGGCGTTTGTTTCAGGGATTCATAAATTAATCCCAGGAATAACTTACCTGGGAATAAAGTAGTGGGAAGTTTATTCCTGGGTATTTTAAAAAAAAGTGTTTGGTTAGTATTTTAATTTTTCAGGAATATTTTCAAAAAATGTTCCCATAAATAGCTAATTGTTGTTTAGTTTAGAATATATATTCCTAGAAAAAACATGATACAGTTACAAAAATACCTCTACCTTGTTTCTAAATCAATTTGAATTTATTTTACTACATTTTATTTTCATTATAACTTGAAGCATTTGAAAATACACCATGAAATAAAATTATGTTTTCATATAGTTGATTGATAGAATATAGTTGATTGTTATAATAGAACAATATTGTTGAAAACTTGAATAGACACATAAATATTTTTTTGCACAAACCAAAAAGAACATAAAGAAATAATAGATGAATTACATATAATAACATGCATTATAACAATGTCTTGATGTAGAGTATGTAAAAGAAAAAAACAGAAATTAATTGGCAGTTGAAAAAACATGGTGGTAGTGGGGTTTTCATGTAGCAAGGCAAATGTCATTCTTAGGAATAAAACATTCCAACTCCTTTTTCATGGGAATAAAAATAGGGAGATCATGGGTTAAAAATTTTCCTGGGTATAATTTGTTCCCAGGTATATTTTTCTTTTACCTTCTACCAAACATGGGAAAGTGCATTCCCATCCTCATATTCCCAGGAATAAATTTTATAACATGGAAACAAACACCCCCTTA

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