Plant MITE

SE2020930

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6132
Medicago truncatula
SE2020930
Mutator
M26
MtChr1:25087906-25088189
ATCTATAAT
TATAATGAGAAATTCTTGTGTAGGAACGAACATAA

Secondary structure and sequence

TSD TIR

5'

3'

ATC    -                          CA   -CTAG    A     A                           ATTT       TTTAACCATGATTGATAATGGTGAATACTGACTGCAAATAATGGTTGAGAGA
   TATA ATGAGAAATTCTTGTGTAGGAACGAA  TAA     CATT TTACA ACAACAAATTAAAACATGACACGTCAT    TTTTTTT                                                    
   |||| ||||||||||||||||||||||||||  |||     |||| ||||| |||||||||||||||||||||||||||    |||||||                                                    G
   ATAT TACTCTTTAAGAACATATCTTTGCTT  ATT     GTAA AATGT TGTTGTTTAATTTTGTACTGTGCAGTA    ATAAAAT                                                    
 TA    C                          AG   ATATA    G     G                           ----       AAAATTTTATTAATCCTTTATTAAATTCTTTACTTTTTATTGACGAGGAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020930

ATCTATAATGAGAAATTCTTGTGTAGGAACGAACATAACTAGCATTATTACAAACAACAAATTAAAACATGACACGTCATATTTTTTTTTTTTTAACCATGATTGATAATGGTGAATACTGACTGCAAATAATGGTTGAGAGAGAGGAGGAGCAGTTATTTTTCATTTCTTAAATTATTTCCTAATTATTTTAAAATAAAATAATGACGTGTCATGTTTTAATTTGTTGTGTGTAAGAATGATATATTAGATTCGTTTCTATACAAGAATTTCTCATCTATAAT

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