Plant MITE

SE2020933

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6135
Medicago truncatula
SE2020933
Mutator
M160
MtChr8:10916265-10916463
TATATAGTT
TATATAGTTGG

Secondary structure and sequence

TSD TIR

5'

3'

          TT  AAAAA   TTA        CA    ----TA     G  AA   A      AATAA   CC    -----------    CTTCATAAGATTGCAAATTA
   TATATAG  GG     GCT   TGGTGCGA  AAAC      ATGAC AG  ACA CGAATT     GTG  GTAG           GATC                    
   |||||||  ||     |||   ||||||||  ||||      ||||| ||  ||| ||||||     |||  ||||           ||||                     
   ATATATC  TC     CGA   ATCACGCT  TTTG      TGCTG TC  TGT GCTTAG     TAC  CATC           AAAG                    
TTG       --  -GTAA   TCG        -C    TTATCG     -  CG   -      -----   CC    ACCACAATATT    TTTTATGTACTTTCGATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020933

TATATAGTTGGAAAAAGCTTTATGGTGCGACAAAACTAATGACGAGAAACAACGAATTAATAAGTGCCGTAGGATCCTTCATAAGATTGCAAATTATTTTAGCTTTCATGTATTTTGAAATTATAACACCACTACCCCATGATTCGTGTGCCTGTCGTGCTATTGTTTCTCGCACTAGCTAGCAATGCTCTATATAGTT

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