Plant MITE

SE2050939

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6141
Medicago truncatula
SE2050939
PIF/harbinger
To25
MtChr6:21832943-21833244
TAG
TAGTTGTCTGATTGGTTATGC

Secondary structure and sequence

TSD TIR

5'

3'

     T  C  A      A       AAAGG  TTGATTTTGTAAAGTTGATGCTGGTTAAAAGTGAGTTCAATTGTAAAATAGTTTATGTTCGGATACATTCATACGTAAACGTGAGTTGAACAATAAATTTGAATATAGAAATTAAATTCTA
 TAGT GT TG TTGGTT TGCGGTG     AA                                                                                                                         
 |||| || || |||||| |||||||     ||                                                                                                                         G
 ATCA CA AT AACCAA GTGAAAA     CC                                                                                                                         
G    -  T  A      A       -----  TTTCGGTTTTAATTAAGATCTCCACATATTAACTAAAACTGTACAAACCAACGAGAGCTCATATTAACTAAAATGGAGGTCTAACTAAGCTTGACATTCGATCTTAAACTTCCAAAACTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050939

TAGTTGTCTGATTGGTTATGCGGTGAAAGGAATTGATTTTGTAAAGTTGATGCTGGTTAAAAGTGAGTTCAATTGTAAAATAGTTTATGTTCGGATACATTCATACGTAAACGTGAGTTGAACAATAAATTTGAATATAGAAATTAAATTCTAGAATCAAAACCTTCAAATTCTAGCTTACAGTTCGAATCAATCTGGAGGTAAAATCAATTATACTCGAGAGCAACCAAACATGTCAAAATCAATTATACACCTCTAGAATTAATTTTGGCTTTCCAAAAGTGAAACCAAATATACACTAG

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