SE2020940

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6142
  • Medicago truncatula
  • SE2020940
  • Mutator
  • M31
  • MtChr2:10439250-10439656
  • TTTAATATA
  • TATAGGCTTAAATATGGAAATGGTCCTTGTAAATATTTGGCGTTTTGGATTTAGTCCCTATAAAAATATATTTTTTTGTTTTAGTCCCTGCAAATATAGAATATTTGGTTTTGATCCTTGGTATTTTGTTTTAATCCTTGTAAAATCATTTCATATTGAAATTGGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAA  T                  G                          A          A         A      T         C              T           A                   A            CAT         AAA      CCTA      ----------TC          -   T
     TA AGGCTTAAATATGGAAAT GTCCTTGTAAATATTTGGCGTTTTGG TTTAGTCCCT TAAAAATAT TTTTTT GTTTTAGTC CTGCAAATATAGAA ATTTGGTTTTG TCCTTGGTATTTTGTTTTA TCCTTGTAAAAT   TTCATATTG   TTGGTC    TAATAT            ATTTTAGTCC TCA 
     || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||   |||||||||   ||||||    ||||||            |||||||||| ||| T
     AT TCCGAATTTATACTTTTA CAGGGACGTTTATAGATTGTAAAACC AAATCAGGGG ATTTTTATA AAAAAA CAAAATCAG GACGTTTATATTTT TAAACCAAAAC AGGAACCATAAAACAAAAT AGGAACATTTTA   AAGTATAAC   AACCAG    ATTATA            TAAAATCAGG AGT 
ATATA  T                  A                          A          C         -      C         T              T           C                   C            ACT         CTA      TAAC      CATCTTATAAAC          G   T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End