Plant MITE

SE2020943

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6145
Medicago truncatula
SE2020943
Mutator
M22
MtChr8:8945859-8946072
CCTTTAACC
GAGAAAGTCTTGTTTGGGCATATACTCAACACCTCAATGTTGGGCACA

Secondary structure and sequence

TSD TIR

5'

3'

CCTTTAACC            T         T   C           G         TACT         C   C    --------TT        -A   TTTA     AT
         GAGAAAGTCTTG TTGGGCATA ACT AACACCTCAAT TTGGGCACA    CACATAAAA TAA AAAA          AAATAAAA  GTA    GTCAA  
         |||||||||||| ||||||||| ||| ||||||||||| |||||||||    ||||||||| ||| ||||          ||||||||  |||    |||||  C
         CTCTTTCAGAAC AACCCGTGT TGG TTGTGGAGTTA AACCCGTGT    GTGTGTTTT GTT TTTT          TTTATTTT  TAT    TAGTT  
CCAATTTCC            C         T   A           A         ----         C   C    TCAATTATCT        AA   TATA     AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020943

CCTTTAACCGAGAAAGTCTTGTTTGGGCATATACTCAACACCTCAATGTTGGGCACATACTCACATAAAACTAACAAAATTAAATAAAAAGTATTTAGTCAAATCAATTGATATATTATAATTTTATTTTCTATTAACTTTTTCTTGCTTTTGTGTGTGTGCCCAAAATTGAGGTGTTAGGTTTGTGCCCAACCAAGACTTTCTCCCTTTAACC

Copy Cancel