SE2020944

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6146
  • Medicago truncatula
  • SE2020944
  • Mutator
  • M39
  • MtChr5:5779062-5779414
  • TATAATTAA
  • TAATTAAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -                                  C                          AAAAA                            ---------G   CATTT     TT    CC  GCTC ---  TTT    ATAATTTGCACACGTGTCACATGATGACTTAACCATTT
  TAATTA AGGCTAAAATATGGTTTTGGTCCCTGCAAATATG CTCGTTTTGGTTTTAGTCCCTGCAAA     TTTGTTGTTTTTGGTCCCTGCAAAATAT          TCT     TGGTT  GGTC  TG    C   AC   TGTG                                      
  |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     ||||||||||||||||||||||||||||          |||     |||||  ||||  ||    |   ||   ||||                                      A
  ATTAAT TCCGATTTTATACCAAAACCAGGGACGTTTATAC GAGCAAAACCAAAATCAGGGACGTTT     AAACAACAAAAACCAGGGACGTTTTATA          CTT     TATCA  GGGA  CG    T   TG   GAAA                                      
 A      A                                  A                          AAAAA                            AAACAAAAAC   -----     --    --  ---- CCC  ---    AAGTTTTAGTTTTCTAAAACGTCCCTGATAAAGAGATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End