Plant MITE

SE2020946

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6148
Medicago truncatula
SE2020946
Mutator
M31
MtChr2:12075606-12075958
TATTAATAA
TATTAATAAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGTAA

Secondary structure and sequence

TSD TIR

5'

3'

         A                                                           --TTTTT  T                    -   GCCTCGTTTA  T       C TG C --   --- TTT    ATGATTTGCACACGTGGCACATGATGACTGAACCCATTT
 TATTAATA GGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGTAA       TT TTGTTTTTGGTCCCTGCAAA TAT          GG TTTGGTC C  G G  CCA   C   TGTG                                       
 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||| |||          || ||||||| |  | |  |||   |   ||||                                       A
 ATAATTAT CCGATTTTATACCAAAACCAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGACATT       AA AACAAAAACCAGGGGCGTTT ATA          TT TTATCAG G  G A  CGT   T   GGAA                                       
A        -                                                           TTTTTTT  C                    T   AAACTAAAAC  -       - -- - AA   CCC ---    AAATTTTTAATTTTCTAAAACGTCCCTGATAAAAAGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020946

TATTAATAAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGTAATTTTTTTTTTGTTTTTGGTCCCTGCAAATATGCCTCGTTTAGGTTTTGGTCCCTGGCGCCACTTTTGTGATGATTTGCACACGTGGCACATGATGACTGAACCCATTTATTAGAAAAATAGTCCCTGCAAAATCTTTTAATTTTTAAAAAGGTCCCTGCAAAGGGACTATTTTCAAAATCAAAATATTTTGCGGGGACCAAAAACAACAATTTTTTTTTACAGGGACTAAAACCAAAACGAGGCATATTTGCAGGGACCAAAACCATATTTTAGCCTATTAATAA

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