SE2030948

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6150
  • Medicago truncatula
  • SE2030948
  • hAT
  • Hat38
  • MtChr7:14293437-14293721
  • AATATTTT
  • TTCAGTGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATATT              GAGAAAAAAA    A          CTAAAATTA   GTT         TTT    - CT  CAAA     C    -------------AA   AATTGTTTAAATTTTTCGGGTGGACTACTACACCACTTTG
      TTCAGTGGCGGAGC          AGTT GGGTGGGCCA         ACC   GAAAAATTG   AAAG C  CG    ATAGA CTAT               TTG                                        
      ||||||||||||||          |||| ||||||||||         |||   |||||||||   |||| |  ||    ||||| ||||               |||                                         
      AAGTCACCGCCTCG          TCGA CCCACCCGGT         TGG   CTTTTTAAT   TTTT G  GC    TATCT GATA               TGT                                        
TTTCAT              --GGAAGTAC    C          ---ACCGGG   -AC         --T    A TT  -TAA     A    AAACGCTCTAAAATA   TAAAACACAGCTTAATTCAAAACTAACTAGGTTTAAAGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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