SE2020952

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6154
  • Medicago truncatula
  • SE2020952
  • Mutator
  • M28
  • MtChr4:26233509-26234006
  • TTTTTTTTT
  • GGCTTAATTGCACTTTTCCCCCCTATAGTTTGCCAATTGTGCGATTTTGCACCCCATAGTTTTAAACGAGCGATTTTGCCCCCTATAGTTTTCCCCTTTTCTGATTTTATGGTCCCCATGACATTTAGTGATGATGTGTCTGTTTTTTTATCAATTAATGTGTGCCACATGTGTAATTCCATTTTTTAAAAAATAAAAAAAATGGTATTTTTCAGATTTCCAGCACTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTTTTT                                              T        A                                                             A            A                 T                   A         CC      T      TA                        --------------------      C  AA
         GGCTTAATTGCACTTTTCCCCCCTATAGTTTGCCAATTGTGCGATT TGCACCCC TAGTTTTAAACGAGCGATTTTGCCCCCTATAGTTTTCCCCTTTTCTGATTTTATGGTCCCC TGACATTTAGTG TGATGTGTCTGTTTTTT ATCAATTAATGTGTGCCAC TGTGTAATT  ATTTTT AAAAAA  AAAAAAATGGTATTTTTCAGATTT                    CCAGCA TA  
         |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||  |||||| ||||||  ||||||||||||||||||||||||                    |||||| ||  T
         CCGAATTAACGTGAAAAGGGGGGATATTAAACGGTTAACACGCTAA ACGTGGGG ATCAAAATTTGCTCGCTAAAACGGGGGATATCAAAAGGGGGAAAGACTAAAATACCAGGGG ACTGTAAATTAC ACTACACAGACAAAAAA TAGTTAATTACACACGGTG ACACATTAA  TAAAAA TTTTTT  TTTTTTTACCATAAAAAGTCTAAA                    GGTTGT AT  
TTTTTTTTT                                              T        C                                                             C            G                 -                   C         AA      T      TA                        ACTCTCTTCCTCCGTGCACT      T  CT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End