SE2020957

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6159
  • Medicago truncatula
  • SE2020957
  • Mutator
  • M52
  • MtChr2:13538738-13539291
  • CTCTTTATA
  • GGCTTAAATGCTCTTTTGGTCCCTTAACTATTTAATTGATATCGCTTTGGTCCCTTAACTAAAAAAAAGATTGTTTGAGGATTTTAAGTTTTTTTTTTAGTCTCGTTTTGGTCCCTTCTGTTAGGTTTCCGTTAGTTTTAATAAAAAACGTTAAGTGTGGACACGTGTCACCTTGTCATTGGCTTTGAGATTTTTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
CTCTTTATA                                      A     C                                                    T               C            T  C    --       T      C     G -G                                A         AT     TTT  TATTTTTGTAAAAAAATACCAGAACCAATGACTAGGTGACACGTGTTAACTCTGGGACA
         GGCTTAAATGCTCTTTTGGTCCCTTAACTATTTAATTG TATCG TTTGGTCCCTTAACTAAAAAAAAGATTGTTTGAGGATTTTAAGTTTTTTTTT AGTCTCGTTTTGGTC CTTCTGTTAGGT TC GTTA  GTTTTAA AAAAAA GTTAA T  TGGACACGTGTCACCTTGTCATTGGCTTTGAG TTTTTTTTA  ATATA   TA                                                           
         |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||||  ||||||| |||||| ||||| |  |||||||||||||||||||||||||||||||| |||||||||  |||||   ||                                                           C
         CCGAATTTACGAGAAAACCAGGGAATTGATAAATTAAC ATAGC AAATCAGGGAATTGATTTTTTTTCTAACAAACTCCTAAAATTCAAAAAAAAA TCAGAGCAAAACCAG GAAGACAATCCA AG CAAT  CAAAATT TTTTTT CAATT A  ACTTGTGCACAGTGGAACAGTAACTGAGACTC AAAAAAAAT  AAAAA   TT                                                           
ATATTTCTC                                      C     A                                                    -               A            T  A    CC       -      -     G GG                                A         --     ---  TAAAATTTTTTATATATATAAAAAAATTTTTTTAGGGTTTCGGTTACTGTTTCACTGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End