SE2020959

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6161
  • Medicago truncatula
  • SE2020959
  • Mutator
  • M39
  • MtChr6:19972936-19973317
  • ATAAAGTTA
  • GGCTAAAATATGGTTTTAGTCCCTGCAAATATACCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAAACTTTTGTTTTTGGTCCTGTAAAATTTTTTGTTTTTGAAAATAGTCCCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAAGTTA                                A                                                 -                                   -  GA  ATTTTCAAAAACAAAAAATTTTGCAAGGACCTTTTTTAAAAATAAAATATTTTACAGGG
         GGCTAAAATATGGTTTTAGTCCCTGCAAATAT CCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAAACTTTTGTTTTTGGTCC TGTAAAATTTTTTGTTTTTGAAAATAGTCCCTGGA GG  CT                                                           
         |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  ||                                                            
         CCGATTTTATACCAAAATCAGGGACGTTTATA GGAGCAAAACCAAAATCAGGGACATTTTTTTTTGAAAACAAAAACCAGG ACGTTTTAAAAAACAAAAACTTTTATCAGGGACTA GG  TG                                                           
ATTGAAATA                                C                                                 G                                   G  --  AAAACACTACTAAACGTATGCACCGTGTAATATTGACTTGGTTAAAACATCAAAAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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