SE2020960

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6162
  • Medicago truncatula
  • SE2020960
  • Mutator
  • M39
  • MtChr3:32818792-32819174
  • TAAAAAGTA
  • TAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAG                                   C                      C    AAAA            GGTCCC       A    T  TTT   TTTTGATCCCTGGCTCCACTTTTGTGATAATTTGCACACGTGTCACATGATGACTTAACCATTTATTAGAGAAATAGTCCCTGC
       TAGGCTAAAATATGGTTTTGGTCCCTGCAAATATG CTCGTTTTGGTTTTAGTCCCTG AAAA    TTTGTTGTTTTT      TGCAAAT TGTC CA   TGG                                                                                    
       ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    ||||||||||||      ||||||| |||| ||   |||                                                                                     
       ATCCGATTTTATACCAAAACCAGGGACGTTTATAC GAGCAAAACCAAAATCAGGGAC TTTT    AAACAACAAAAA      CCAGGGA CGTT TT   ATA                                                                                    
ATGAAAA                                   A                      A    AAAA            ------       -    -  ---   AAACGAAAACCTTTATCAGGGACGTCCCTGATAAAGGTTTTTGTTTTATAAAACGTCCCTGGAAAAAGTTTTAGTTTTCTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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