SE2050961

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6163
  • Medicago truncatula
  • SE2050961
  • PIF/harbinger
  • To12
  • MtChr2:346242-346596
  • TAA
  • AGGGTGTGTTTGTTTCAAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     ATAATTGTTGATT      --        --------      AA    TAT  CTATGTTTGTTACAAGTTTATTAAATTTTATTCCCGGGTATAAAATGTTCCTGGGAATAGAAAAAATTTCCCAAGGAAAAGGGTGGGAATAAAGTTCCCATGGAGATGGGAATA
  AGGGTGTGTTTGTTTCAAGTT             CCCGGG  AATAAAAT        GATAGG  TGTA   GC                                                                                                                  
  |||||||||||||||||||||             ||||||  ||||||||        ||||||  ||||   ||                                                                                                                   
  TCCCACACAAACAAAGTTCAA             TGGTTT  ATAAGGAT        TAAGGA  ACCT   TA                                                                                                                  
AA                     ------------A      AA        CCTTATTG      --    ---  TATTTCTACCCTTAAAATAAGGTTCCTTAAATCCTTTTTATACAAACCAATCGAAATATTATAAGGATCCTTGGTATTTTTATCCCTAATATTATCCATTTGATAAATACTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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