SE2020964

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6166
  • Medicago truncatula
  • SE2020964
  • Mutator
  • M5
  • MtChr8:7428640-7428917
  • AAATAAAAA
  • TGGGGAATTAGTCACTTTAGTCTCTAAATAGGAAAGAAGTCGTCACTTTAGTCCTTGAATGCAGATAAATTGCAAAATAATCCCTGAATGTAGACTCTGTTAATTAAATTAGTCCCTAAATGTAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATAAAAA                         A   A     GA   C                        T             A      A              AA    -A    TCC     T  A   TGC
         TGGGGAATTAGTCACTTTAGTCTCT AAT GGAAA  AGT GTCACTTTAGTCCTTGAATGCAGA AAATTGCAAAATA TCCCTG ATGTAGACTCTGTT  TTAA  TTAG   CTAAA GT GAC   
         ||||||||||||||||||||||||| ||| |||||  ||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||  ||||  ||||   ||||| || |||   G
         ACCCCTTAATCAGTGAAATCAGGGA TTA CCTTT  TCA CAGTGAAATCAGGGACTTACGTCT TTTAACGTTTTGT AGGGAC TACATCTGAGACAA  AGTT  AGTC   GATTT CA CTG   
GAAAAATAA                         C   C     AC   T                        C             C      C              CC    AA    CCT     -  -   CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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