SE2030965

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6167
  • Medicago truncatula
  • SE2030965
  • hAT
  • Hat25
  • MtChr5:16598322-16598701
  • CGCATAAT
  • CAGTGGCGGATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CGCATAAT              ------------T    TGACCGGCGGGGGCCACGGCATCCCCCATATTTCCCTTATATACAATATTAGTAGTATATAATCATTAGATTTCCACTGCTGCAGTGGTAAGGGGGTGCCATAAAATTCTTAAGGTCGCGAGTTCGGGCCTTTCCCTGCCTTGTTTTTTACATTTTA
        CAGTGGCGGATCTT             TCGG                                                                                                                                                             
        ||||||||||||||             ||||                                                                                                                                                              
        GTCACCGCCTAGAA             CCCC                                                                                                                                                             
TAATACGC              CTCAATTAAACAA    CACGGTTTGAAAATACCTTATATATAATTTACCATAGTTTATAATTGTCACAAATTATTAGTCGAATCACCATATGTTAGAAACTTTCATAGATTACTAACCCCCAAGCTTAGGGGTGTTTACGAAAAAAAAATTGTGTTATAAATTTTAATCTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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