SE2020966

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6168
  • Medicago truncatula
  • SE2020966
  • Mutator
  • M120
  • MtChr5:7902131-7902446
  • TTAAAAGAA
  • AAGGTGCCATTTAATTTGGGAAAGGACAGTTCTTTCCCATCGTGGGAAAGTTGATCATGTCCATTAGATTAAATGAGGAATATATTCTTATCATACTCTCTCAACCACTACATTATTTTTTTATACTATCTTTCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAG                          CAG                                              A          C                       C              C           CTCTCTCTTTC    CCC
       AAGGTGCCATTTAATTTGGGAAAGGA   TTCTTTCCCATCGTGGGAAAGTTGATCATGTCCATTAGATTAAATG GGAATATATT TTATCATACTCTCTCAACCACTA ATTATTTTTTTATA TATCTTTCACA           ATGT   
       ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||           ||||    
       TTCCACGGTAAATTAAACCCTTTCCT   AAGAAAGGGTGGCACCCTTTCAATTAGTACAGGTAATCTAATTTAT CCTTGTATAA GATAGTATGAGAGAGTTGGTGAT TAATAAAAAAATAT ATAGAAAGTGT           TACA   
AAGAAAA                          TTA                                              C          A                       C              A           --------ACC    CAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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