SE2030976

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6178
  • Medicago truncatula
  • SE2030976
  • hAT
  • Hat48
  • MtChr5:42419947-42420673
  • GCGAATAG
  • CAGGGCCGTTCCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GCGAATAG        T      AGTTTTAC      TAGGCATAATAT    A -  -  CCCTTACATAATAGATCATAATTTTTTTTAGCTCATTGTTGTGTTTTTTTAGCTCTTCATTTCGTTTTTTATTTCATTTTTCACTACCAAATAAATGTTTTTTTAGATAACATTGAAAATAAATTAAATACTCTATATACACCAAAACAAAATAAAATACCATAGATGTAGAGAAAAATAGCACATGCATAGTAAACTAAAATTTTAGCACCCCATTTTCAACTAAAATAGAATTTGCTTTGTTATAAAAATTATCCCAATTTCTTGGATAAAAAATATCGTCAATATTTTTAATATTAGTGAAACACATTAT
        CAGGGCCG TCCTAG        GGGCCT            GAAA A AG GG                                                                                                                                                                                                                                                                                                                         
        |||||||| ||||||        ||||||            |||| | || ||                                                                                                                                                                                                                                                                                                                         T
        GTCCCGGC GGGATC        CCGTAT            CCGG G TC CG                                                                                                                                                                                                                                                                                                                         
GATAAGCG        C      --------      ------------    C C  A  CTGCCGGATCCCGGGTACGGCCATCCCCGGGTTTTCAAAAAAATTCCACATCCCACATATATCTTTATAAACCTAAAATCCCCCATATATATCGTTTTAATAGACTTTTCCGGGTTTGAAACTCTACTATTTCCTTACCCGACTTTAGACAATTACAAAAACCGGGAAAATCACTCTAAATGATATATATAGGGTACACCATGTTTATAAAGATATATGTGGGAGGATATTGAAAAAAACTAACAAGAATTATTATACGAGTTTTTAAATAATAGCTTCTTTAATTACTATAAAAAAACCCAGGAAATAAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3