SE2030981

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6183
  • Medicago truncatula
  • SE2030981
  • hAT
  • Hat1
  • MtChr1:9604686-9605242
  • CTCTTCTT
  • TAGGCATGACAATGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTTCTT        A        -T     A   -- C  GTTTTATCTTCCCCGTCCCTATATCCGATTCTCTTATACTTACCCGTTACCTTATCCATATCCAACGGAGATGAGAAATTGAACCTCATCCCCGTCTCCGACCAGTTCGAGCATCCCCACCCCATCCCTATCCCCGCATTGAATATTGTTTTTTAATAAATTATAGAAGTTTTTTGCAACCACTAGAAAAATGTTGTAATGCATTATCTAGTAATATGCTCACTTTAATATTTGTTAGA
        TAGGCATG CAATGGGG  GGGAT GGG  A GA                                                                                                                                                                                                                                               
        |||||||| ||||||||  ||||| |||  | ||                                                                                                                                                                                                                                                
        ATCCGTAC GTTATTTT  ATATA GGC  C AA                                                                                                                                                                                                                                               
TTCTTCTC        C        GG     -   AC -  TGGGTAGGCTTGGTTTGAGTTAAACTGCCTAAAAGGGGTAAAACTAACCCAAACTCAAAAGAGGCTAAAGTTTTGTGCCCATACCCTGCCCATTGCCTATATATCCATGGGGGCTTGGGTATGGGTTTGGGTGGGGTTTACGTCTTTTAATGAAATACAACTATACAGTACAATAAAACAAACTATTAACATAATATTTTTGATGGTAACTATAAATTTCCTCGTTGATTTAGTTAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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