SE2020983

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6185
  • Medicago truncatula
  • SE2020983
  • Mutator
  • M21
  • MtChr5:39674092-39674535
  • TTGATTAAT
  • TTGATTAATGGAAAATTCTATGGTGAAGTCACGAAAATGACTTTTGTGGTGAAGTTAACATTA

Secondary structure and sequence

TSD    TIR
5'



3'
         T   AAA          A     C      -       G   T        CA   TAGT   AAA      -   A TAACACCCCACTATTTGTACAATGGCATCAAAAGTTCAGTCCCCATAATATCAACAATTCATCAGACTAACAAGAATACATTTAATCTAATTTTATCCTACCTTGTTTTAAGTGTAACACCCCACAAAGTGTAACACTTA
 TTGATTAA GGA   TTCTATGGTG AGTCA GAAAAT GACTTTT TGG GAAGTTAA  TTA    ATC   AATGTT GTG G                                                                                                                                            
 |||||||| |||   |||||||||| ||||| |||||| ||||||| ||| ||||||||  |||    |||   |||||| ||| |                                                                                                                                            A
 AATTAGTT CCT   AAGATGCCAC TCAGT CTTTTA CTGAAAA ACT TTTCAATT  AAT    TAG   TTACAA TTA A                                                                                                                                            
T        C   -CG          G     -      A       A   T        AA   ----   -AA      A   - GTAAAAATTTAACAACTAATGACTAAGTACTAATTATCATTAAGTAGGTCATTACGAACGTTGTAGAACCTGAATGTTTATAATAAAATAGCAACTGTAGAAATTGTATGTTTGTATCAACTACTATAATACACTATCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End