Plant MITE

SE2050990

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6192
Medicago truncatula
SE2050990
PIF/harbinger
To12
MtChr5:18785754-18786108
TTA
AGGGTGTGTTTGTTTCAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                     TACCAA   T      A       ----C      ---       TAA  -  GAGAATTTTATTCCAAGGAATTTAGGAAAAATATGTTTGGTTAGCTTTATAATATTCCTAGGAACCATAAAAATAGGGATTATAATAGGTAAACTATTTATGAATTT
  AGGGTGTGTTTGTTTCAAGTT      ATT ATTCCT GGAATAA     ATTCCT   TGGAATA   AG AT                                                                                                           
  |||||||||||||||||||||      ||| |||||| |||||||     ||||||   |||||||   || ||                                                                                                            
  TCCCACACAAACAAAGTTCAA      TAA TAAGGA CCTTATT     ATCCTT   TATACGG   AT CA                                                                                                           
AT                     TATTAA   C      C       TTACT      ACA       ---  A  AACAATGTTCAAATGATTTAAAATAAGAGCCCATATTTTACAAGGACCCTTATCTTTTTTAAAGGGTTCCTTTTTCCACCCTTATTTCAAGGGTACCTCTACTCTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050990

TTAGGGTGTGTTTGTTTCAAGTTTACCAAATTTATTCCTAGGAATAACATTCCTTGGAATATAAAGATGAGAATTTTATTCCAAGGAATTTAGGAAAAATATGTTTGGTTAGCTTTATAATATTCCTAGGAACCATAAAAATAGGGATTATAATAGGTAAACTATTTATGAATTTATTCTCATCTCCATGGGAACTTTATTCCCACCTTTTTCCTTGGGAAATTTTTTCTATTCCCAGGAACATTTTATACCCGAGAATAAAATTTAGTAAACTTGTAACAAACATAGGCATATACATTCCTATCATTTTATTCCCAGGAATCAATAATTATAACTTGAAACAAACACACCCTTA

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