SE2010993

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6195
  • Medicago truncatula
  • SE2010993
  • Tc1/Mariner
  • St21
  • AC235753:26582-26907
  • TA
  • TACTCCCTCCGTCCCATATTATAAGCAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                T                 AAAATCACACTTATTAAGAAA    AAACATAGTAGTTTGCAACATAGTTTCTTGTCTTACCCATGAAATAAGTTTTATAGGAAGATGTAAAAACAATTTTCATTGGTTATTGGTTATTGAGAAAATGAAAGAGAGAGC
TACTCCCTCCGTCCCA ATTATAAGCAAAAAAAA                     ACTA                                                                                                                  
|||||||||||||||| |||||||||||||||||                     ||||                                                                                                                  A
ATGAGGGAGGCAGGGT TAATATTCGTTTTTTTT                     CGGG                                                                                                                  
                T                 ---------------------    TGAAAGAAACAGGGTCTAATATTCGTTTTTTCTGGTTGAAAATAGTAAAAATTAATACAACAAAGTTTTTTAATAGAAAAGGTTTCCTTTTAATTTACGTTTCACGTAAGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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