Plant MITE

SE3510336

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6554
Mimulus guttatus
SE3510336
Tc1/Mariner
St4
scaffold_3:14715146-14715421
TA
TACTCCCTCCGTTCCCTATTAAGTGTC

Secondary structure and sequence

TSD TIR

5'

3'

         C     C  T   G    ----------------GTT  --  GCTTTGCACAAAGATTAAGAAGCTCAATAAATGTGTCTTGATTTTAGGTAAAATATATTAGAAAGACTAAAATAACCTTGATTATTTAATGATAT
TACTCCCTC GTTCC TA TAA TGTC                   TT  TG                                                                                               
||||||||| ||||| || ||| ||||                   ||  ||                                                                                                
ATGAGGGAG CAAGG GT ATT ACAG                   CA  GT                                                                                               
         A     T  T   G    AGAAAAAATTTTATAAAAA  AG  ATAATAGACAGTGAAATCGAAAGGTTATGACGTAATTTAAGTAAAAAAGGATAAAATTGGAATAATTAAGTTGATTCATAATTGAGAGAGAATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510336

TACTCCCTCCGTTCCCTATTAAGTGTCGTTTTTGGCTTTGCACAAAGATTAAGAAGCTCAATAAATGTGTCTTGATTTTAGGTAAAATATATTAGAAAGACTAAAATAACCTTGATTATTTAATGATATGATAAGAGAGAGTTAATACTTAGTTGAATTAATAAGGTTAAAATAGGAAAAAATGAATTTAATGCAGTATTGGAAAGCTAAAGTGACAGATAATATGGAACAAAAATATTTTAAAAAAGAGACAGTTATTGTGGAACAGAGGGAGTA

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