SE3320003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7468
  • citrus sinensis
  • SE3320003
  • Mutator
  • M3
  • chr1:18008394-18009029
  • ATTTGTATC
  • TGTATCGGGTAAAATCTCGTTTAATTCTTATATTAAAATATTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
ATT    -TC        T       A           AA  T      ATCTGA        AAA      A     A           AGCCGATA          A C      --CCTC        A   G          AA     A       A               -----     T    C    G              -    -            T   A                     TT           T     -     CACACT   ------    -     - TATATTAATTTTTTTTTAAATGTCAA
   TGTA   GGGTAAAA CTCGTTT ATTCTTATATT  AA ATTAGT      TTAGTTTT   ATTTTT AAAAT CCTCAAAACAT        TTAAATTATT G ACATTT      TTATTTTT GTT CTTTTGGCTT  TTTTT CAATATT TTCTCTTACAATAAT     TTTTT TGGG ATTA TAAAAAGAAAAAAA TTAA TTATCAATTTAA CTC AAAAATAAAATAGAAACAAAA  AATATGTGTTA TTTTT TGGAA      GCT      GAGG AGTTA A                          
   ||||   |||||||| ||||||| |||||||||||  || ||||||      ||||||||   |||||| ||||| |||||||||||        |||||||||| | ||||||      |||||||| ||| ||||||||||  ||||| ||||||| |||||||||||||||     ||||| |||| |||| |||||||||||||| |||| |||||||||||| ||| |||||||||||||||||||||  ||||||||||| ||||| |||||      |||      |||| ||||| |                           
   ACGT   CCCATTTT GAGCAAA TAGGGATATAA  TT TAATCA      AATCAGAA   TAAAAA TTTTA GGAGTTTTGTA        AATTTAATAA C TGTAGG      AATGAAAA CAA GAAAACTGAA  GAAAA GTTATAA AGGAGAATGTTATTA     AAAAA ACTT TAAT ATTTTTCTTTTTTT AATT AATAGTTAAATT GAG TTTTTATTTTATTTTTGTTTT  TTATATGTAAT AAAAA ACTTT      CGA      ACAG TTTTT T                          
 CT    TTA        C       G           AG  C      CCAGTA        ATA      A     C           GATATGAG          - -      TATAAC        A   A          -C     C       C               CAAAT     T    -    -              T    C            -   G                     TC           T     C     ------   ATGTAC    G     T TTAAATAACATTTTTAATGGATAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End