SE3320012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7477
  • citrus sinensis
  • SE3320012
  • Mutator
  • M6
  • chr5:4666938-4667182
  • TAACCCAAG
  • GGGACTCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACCCAA     T   --C  G    ----  - AATCTGTAAGGTACAGACTGCAGCATCAGCCGTTGGATGTGGTTGGATATGGAGTGAGAAACTAAACAATAGAAAATCGGATGGTGGGATGACGG
        GGGAC CGA   TA CTTA    CA G                                                                                               
        ||||| |||   || ||||    || |                                                                                               G
        CCCTG GTT   GA CGTT    TG T                                                                                               
       A     -   CCG  -    AACG  T AAGTTAAACCTAAACCTATTAGTTACACCCCCGTTTTTTACCTCTTGGAGAACCCAATCCTGGACAGATACCATGTCTAAGACATTGTTTGTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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