Plant MITE

SE3320040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7505
citrus sinensis
SE3320040
Mutator
M19
chr3:569963-570217
TGAGAAATA
T

Secondary structure and sequence

TSD TIR

5'

3'

TGAGAAA    AGAC    ---------  A    - C ATCATTAACAATACATAATTATATAGCAGCCGTTAAATTTGCATCCAACGGTTATGGAAATATAAAATAATAAAATCATGTCATTCTCACAACCGTTA
       TAGG    TGTT         AT TTAT A A                                                                                                  
       ||||    ||||         || |||| | |                                                                                                  G
       TACT    ATGA         TG ATGG C A                                                                                                  
    GTT    ----    AGAATTTTA  -    T - GTTCTATGTCATCAATTATAGTATAATAAAGAGTCCGAAAACAATACAATGTATTAGTACATTGTATGTACTAATACATCATCGGCAATCTACTTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320040

TGAGAAATAGGAGACTGTTATATTATACAATCATTAACAATACATAATTATATAGCAGCCGTTAAATTTGCATCCAACGGTTATGGAAATATAAAATAATAAAATCATGTCATTCTCACAACCGTTAGATTTTCATCTAACGGCTACTACATAATCATGTATGTTACATGATTATGTAACATAACAAAAGCCTGAGAAATAATATGATATTAACTACTGTATCTTGACTGGTAGTATTTTAAGAAGTATCATTTG

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