Plant MITE

SE3320048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7513
citrus sinensis
SE3320048
Mutator
M2
chr1:16178570-16178774
TTTTTTTAA
AAGAGTAATGATATAATCACAAACTCTTGTACAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTT      A                             TTATTTTGTACAAAC       GT           T   A   -T      CTTT  GCCCAC    TTT
       AAGAGT ATGATATAATCACAAACTCTTGTACAAAT               TGATGTG  ATCAATTCATT GTT AAT  AAATAT    TG      ATGA   
       |||||| |||||||||||||||||||||||||||||               |||||||  ||||||||||| ||| |||  ||||||    ||      ||||   A
       TTCTCA TACTATATTGGTGTTTGAGAACATGTTTA               ACTACAC  TAGTTAAGTAA TAA TTA  TTTATG    AT      TACT   
AATTTTT      C                             ---------------       AG           C   C   CT      TTTT  ------    TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320048

TTTTTTTAAGAGTAATGATATAATCACAAACTCTTGTACAAATTTATTTTGTACAAACTGATGTGGTATCAATTCATTTGTTAAATTAAATATCTTTTGGCCCACATGATTTATTTTCATTATTTTGTATTTTCATTCAATCAATGAATTGATGACACATCAATTTGTACAAGAGTTTGTGGTTATATCATCACTCTTTTTTTAA

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