SE3320052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7517
  • citrus sinensis
  • SE3320052
  • Mutator
  • M23
  • chr2:27569868-27570026
  • CAAAAAATG
  • TGGGGTCCAGCTATGGTGCCACAGTTGTATGGTACCACAGCTGGATCCAACCATTGAATTTAGCTCTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAAAA      CC G         C                 C  C                        -C    GA
       TGGGGT  A CTATGGTGC ACAGTTGTATGGTACCA AG TGGATCCAACCATTGAATTTAGCT  TAGT  
       ||||||  | ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||  ||||   
       ACCCTA  T GATACCATG TGTCAACATACCATGGT TC ATCTAGGTTGGTAACTTAGATCGG  GTCA  
GTAAAAA      TT G         A                 A  A                        AT    AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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