SE3320064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7529
  • citrus sinensis
  • SE3320064
  • Mutator
  • M28
  • chr7:12176173-12176339
  • TCTTTTTAA
  • AAGGGTTTGGCTACCTTGGATCAGCTCCAAAGTAGACCACCCGCCACAGCCATTGGATGCATGTACTTGAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTTTTT   -   -T      C                A                               GTA  TGA  TTGAA
       AAG GGT  TGGCTA CTTGGATCAGCTCCAA GTAGACCACCCGCCACAGCCATTGGATGCAT   CT   AC     
       ||| |||  |||||| |||||||||||||||| |||||||||||||||||||||||||||||||   ||   ||     A
       TTC CCG  ACTGAT GAACCTAGTTGAGGTT CATCTGGTGGGTGGTGTTGGTAACCTACGTG   GA   TG     
  AATTT   T   TC      A                C                               --A  CAG  TTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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