SE3320065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7530
  • citrus sinensis
  • SE3320065
  • Mutator
  • M14
  • chr1:19332416-19333021
  • TTATTGTTA
  • AGGGATATTATCATTTTTCCACTAAAGTTGTTCTGACACATCATGTCAGTACTACGGTTTGGTAAAAACATCATTTTACCATCAAACGTTTAAACTGTTAGCATTTTCCCACCATTCCGTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTGTT                  C  C                C   A                                   C               C              C  C          CTAAATAAAAATTATGCTGATATCAT   -    TTTT GACATCTCACGCGAAGCCAAAACGTTGCGTTTTGCAATTGTAAAAACACAAGCAATTTGGACATGGAAGCCCTAGAAATCGAAATCAACCCCCCTCTCTCTCGTTTCTTGTTTCATCTCCGCCCTCTCTCGCTCATTGTCACTGACC
        AGGGATATTATCATTTTT CA TAAAGTTGTTCTGACA ATC TGTCAGTACTACGGTTTGGTAAAAACATCATTTTA CATCAAACGTTTAAA TGTTAGCATTTTCC AC ATTCCGTTAA                          AAG GGCA    G                                                                                                                                                   
        |||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||                          ||| ||||    |                                                                                                                                                   C
        TCCCTATAATAGTAAAAG GT GTTTCAATAAGACTGT TAG ACAGTCATGGTGCCAAATCATTTTTGTAGTAAAAT GTGGTTTGCAAATTT ACAATCGTAAAAGG TG TAAGGCAATT                          GAG CAAT    T                                                                                                                                                   
ATTGTTAT                  A  A                A   C                                   A               A              A  A          ------------------------TT   T    ---- ATAAATTGTCTTTTACGTATTTTTCAGTTAAAATGGGTACCTCGCATTTTCTACTAAAATGGGAAATTTTTCCTTCTTCTTGTTTTCTGCTAAATTAATATTTTAATGGGGGTTTTCTGCTGTGATGACGCTCTCATTCTCTCTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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