Plant MITE

SE3320070

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7535
citrus sinensis
SE3320070
Mutator
M30
chr1:13410497-13410637
CAAAAATTA
GG

Secondary structure and sequence

TSD TIR

5'

3'

CAAAAATTA  ATCC              A      A      --CA                    GACT
         GG    CCCTATCTTACAAC AATGTA GATACA    TCTCATATGAACAGTGTATG    
         ||    |||||||||||||| |||||| ||||||    ||||||||||||||||||||    C
         CC    GGGATAGAATGTTG TTACAT CTATGT    GGAGTATACTTGTCACATAC    
ATTAAAAAC  GTTA              A      C      AAGG                    ACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320070

CAAAAATTAGGATCCCCCTATCTTACAACAAATGTAAGATACACATCTCATATGAACAGTGTATGGACTCCACACATACACTGTTCATATGAGGGGAATGTATCCTACATTAGTTGTAAGATAGGGATTGCCCAAAAATTA

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