Plant MITE

SE3320118

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7583
citrus sinensis
SE3320118
Mutator
M5
chr9:1377343-1377510
ATGATAAAA
GG

Secondary structure and sequence

TSD TIR

5'

3'

ATGATAAAA  ATAAAA                                     CAA      AATTC      ATTCAAGTGGA
         GG      CTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACC   CCGTTG     CCACTT           
         ||      |||||||||||||||||||||||||||||||||||||   ||||||     ||||||           C
         CC      GATGTCACGTTGACACTATGGCACGGTGTCAACGTGG   GGCAAT     GGTGAG           
AAAATAGTA  CAGTCC                                     -TC      --CTA      TTTACTCACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320118

ATGATAAAAGGATAAAACTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACCCAACCGTTGAATTCCCACTTATTCAAGTGGACCCCACTCATTTGAGTGGATCTAACGGCTGGTGCAACTGTGGCACGGTATCACAGTTGCACTGTAGCCTGACCCATGATAAAA

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