Plant MITE

SE3320150

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7615
citrus sinensis
SE3320150
Mutator
M12
chr4:15088540-15089175
AAGTCCATT
GGGTAATTTTTAAAAACCTCCCCTGAGATTTGGGCTTGTTGTAAGTAGATGGTGAGAATTGGTTTATTTGTAAAAAACCCTCTACCGTCATTTAATTTTAACATTGATCGTTAGTTGACTGTGCAAAGACAATATTACCCTTAACAATAGTTTGTAGAC

Secondary structure and sequence

TSD TIR

5'

3'

AAGTCCATTA                                                            G                  C          T                                             A        A             GGAA       T          ---CAAT   -  T  CTATTTTACCATCTTTAAATTATTGATATTTTCTTAAAGTTCCTACAAAAAAATAAAATTAAAAACTTGAAAAATCCTCTTTAAATTATTGATATTTCCTTAAAGTTCCTACAA
          GGGTAATTTTTAAAAACCTCCCCTGAGATTTGGGCTTGTTGTAAGTAGATGGTGAGAATT GTTTATTTGTAAAAAACC TCTACCGTCA TTAATTTTAACATTGATCGTTAGTTGACTGTGCAAAGACAATATT CCCTTAAC ATAGTTTGTAGAC    ATAGCTA AAAAAAAAAC       ATT AT GG                                                                                                                  
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    ||||||| ||||||||||       ||| || ||                                                                                                                   
          CCCATTAAAAATTTTTGGAGGGGACTCTAAACCCGAACAATGTTCATCTACCGCTCTTAG CAAATAAACATTTTTTGG GGATGGCAGT AATTAAAATTGTAACTGGCAATCAACTGACACGTTTCTGTTATAA GGGAATTG TATCAAACATCTG    TATTGAT TTTTTTTTTG       CAA CG CG                                                                                                                  
ATTACCTGAA                                                            A                  A          C                                             C        G             ATTG       -          ATTTTAA   T  -  CTTTTCGTGTTTGGGATAAAAAACTGTTAAAATAGAAACAATTAAGGTTTCTAAATGTTATAGTATCCATTGCTAATACTGATAAAGTAAAAATTCAAAAATTAAAATAGAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320150

AAGTCCATTAGGGTAATTTTTAAAAACCTCCCCTGAGATTTGGGCTTGTTGTAAGTAGATGGTGAGAATTGGTTTATTTGTAAAAAACCCTCTACCGTCATTTAATTTTAACATTGATCGTTAGTTGACTGTGCAAAGACAATATTACCCTTAACAATAGTTTGTAGACGGAAATAGCTATAAAAAAAAACCAATATTATTGGCTATTTTACCATCTTTAAATTATTGATATTTTCTTAAAGTTCCTACAAAAAAATAAAATTAAAAACTTGAAAAATCCTCTTTAAATTATTGATATTTCCTTAAAGTTCCTACAAGAAAGATAAAATTAAAAACTTAAAAATGAAATAGTCATAATCGTTACCTATGATATTGTAAATCTTTGGAATTAACAAAGATAAAATTGTCAAAAAATAGGGTTTGTGCTTTTCGCGCTAACAATTTTAGTTTTTTTTTTAGTTATGTTAGTCTACAAACTATGGTTAAGGGCAATATTGTCTTTGCACAGTCAACTAACGGTCAATGTTAAAATTAACTGACGGTAGGAGGTTTTTTACAAATAAACAGATTCTCGCCATCTACTTGTAACAAGCCCAAATCTCAGGGGAGGTTTTTAAAAATTACCCAAGTCCATTA

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