Plant MITE

SE3320177

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7642
citrus sinensis
SE3320177
Mutator
M6
chrUn:5822868-5823037
TTTGATAAC
GGACCTGTCT

Secondary structure and sequence

TSD TIR

5'

3'

TTTGATAAC    C  T  ATGGTAC   TT     ACAAA ATCTCCCGTCATCCCACCATCCGATTTTCTATTGTTTAGTTTCTCACTCC
         GGAC TG CT       ACA  CTGTA     C                                                  
         |||| || ||       |||  |||||     |                                                   
         CCTG AC GA       TCG  AATGT     C                                                  
CAATAGTTT    A  T  -------   --     ----- TTAGACATTCGATGTCTGACGTCGTAGTCGGCAACCTACACCAACCTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320177

TTTGATAACGGACCTGTCTATGGTACACATTCTGTAACAAACATCTCCCGTCATCCCACCATCCGATTTTCTATTGTTTAGTTTCTCACTCCACATCCAACCACATCCAACGGCTGATGCTGCAGTCTGTAGCTTACAGATTCTGTAAGCTAGTCAAGTCCTTTGATAAC

Copy Cancel