Plant MITE

SE3320186

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7651
citrus sinensis
SE3320186
Mutator
M6
chr2:4932482-4932651
GTAAATGTA
GGACCTGTCTATGGTACAGATTCTGTAA

Secondary structure and sequence

TSD TIR

5'

3'

GTAAATGTA    C  T   TGG              CAAAC   TC   TCATCCCACCATCCGATTTTCTATTGTTTAGTTTCTCA
         GGAC TG CTA   TACAGATTCTGTAA     ATC  CCG                                      
         |||| || |||   ||||||||||||||     |||  |||                                      C
         CCTG AC GAT   ATGTCTAAGACATT     CGA  TGT                                      
ATGTAAATG    A  T   CGA              -----   --   CTGACGTCGTAGTCGGCAACCTACACCAACCTGCACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320186

GTAAATGTAGGACCTGTCTATGGTACAGATTCTGTAACAAACATCTCCCGTCATCCCACCATCCGATTTTCTATTGTTTAGTTTCTCACTCCACGTCCAACCACATCCAACGGCTGATGCTGCAGTCTGTAGCTTACAGAATCTGTAAGCTAGTCAAGTCCGTAAATGTA

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