SE3320200

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7665
  • citrus sinensis
  • SE3320200
  • Mutator
  • M2
  • chr1:25528482-25528829
  • TTTTTAATT
  • GAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGACGTGACATTAATTCATTGGTTGAATGAAAATATAAATTAATAAAAATAAATCACGTGGGCCAAGTGATATTTAATTCAACCAATCTTATCATGCCACATCTTGTACAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTAATT           C                                                                                                                                            ---         CT
         GAGTAATGATA AGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGACGTGACATTAATTCATTGGTTGAATGAAAATATAAATTAATAAAAATAAATCACGTGGGCCAAGTGATATTTAATTCAACCAATCTTATCATGCCACATC   TTGTACAAA  
         ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||  T
         CTCATTACTAT TCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACTGCACTGTAATTAAGTAACCAACTTACTTTTATATTTAATTATTTTTATTTAGTGCACCCGGTTCACTATAAATTAAGTTGGTTAGAATAGTACGGTGTAG   AACATGTTT  
TTAATTTTT           A                                                                                                                                            TCA         TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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